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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015948435.1_cds_XP_016489711.1_80208
CDS Infomation

[gene=LOC107809566] [db_xref=GeneID:107809566] [protein=asparagine--tRNA ligase, chloroplastic/mitochondrial-like] [protein_id=XP_016489711.1] [location=join(50993..51400,51511..51579,52988..53098,53491..53595,54356..54493,55304..55384,55591..55668,55818..55886,55991..56065,56161..56244,56359..56445,56545..56640,56717..56791,57445..57571,57844..57959)] [gbkey=CDS]
Sequence

ATGGCTGGTGCTCTGTCTCCAGCCACCACTCTCCGTCTTAAACCCTTCTGCACTGTACGG
TTCTTCACTAATTACCGCAAACCCATTAAAATCTTAACCCCCAATTTCCACTCTTCGTTC
CCTCTAAAGCTGCACACCAGCTCAACTCCAGCACCCTATTTGTGCCGTCAACGGAGCTTT
TGCTCTGTAGTCTCCGCCGCTATTTCCTCCGGAGAAGCAGTTGAAAAATCCAAATTTGAG
CAAAAAAAGGATATAAAAACTGAGCAAGTTAGGGAATTTAAAAAAAGGTTGAGCATTGCT
GACATAAAGGGAGGGCCTGACGAAGGTTTGGACCGGCTGGGGGAGACTTTGGTGGTTAGA
GGTTGGGTTCGCACGGTTAGGGCTCAGAGTAGCGTTACGTTTATTGATGTTAATGATGGT
TCTTGTCTTTCAAATATGCAATGTGTTATGGGCTCTGAAGCTGAGGGTTATGATCAGGTA
GATAATGGTTCAATTTCAACTGGTGCATCAGTATGTATAGAAGGTACTGTGGTCGGCAGT
CAAGGATCAAAGCAGAAAATAGAGTTGAAGGTTCAGAAGCTTGTAGTGGTTGGTAAAAGC
GATCCTTCTTTTCCTATCCAGAAGAAAAGGGTCAGCAGAGAATTTTTGAGGACGAAAGCT
CATCTTCGCCCTCGAACTAATACTTTTGGTGCGGTTTCAAGGGTAAGAAATGCTTTGGCC
TATGCTACACACAAGTTTTTCCAAGAAAATGGCTTTGTTTGGGTCTCAAGTCCAATAATC
ACTGCTTCTGATTGTGAAGGAGCTGGTGAGCAATTCCGTGTGACCACCTTGATTCCAACC
TCCAAAGAATGTGGAGATTCACCAGTTAATGCTATCCCTACTACCGAATCCGGTTCTGTT
GACTGGTCGCAAGACTTCTTCGGGAAACAAGCTTTTTTAACCGTGTCCGGACAACTCAAT
GGCGAAACATATGCTACTGCTCTCTCCGATATCTATACTTTTGGCCCCACATTTAGAGCA
GAAAATTCCAACACTTCCCGGCACTTAGCTGAGTTCTGGATGATCGAACCAGAACTAGCT
TTTGCGGACTTGGATGATGACATGGCCTGTGCTACTGCCTATCTCCAGTATGTAGTGCAA
TATGTGTTGGAGAATTGCAAAGAAGATATGGATTTTTTCAATACTTGGATTGAGAAAGGG
ATCATCAATAGACTAAGTGATGTTGTTGAGAAGAACTTTGTGCAGTTGACGTACACGGAC
GCCATTGAGCTTCTATTAAAAGCAACAAAGAAGTTCGATTTCCCAGTGAAATGGGGATGT
GATTTGCAAAGTGAGCATGAACGATATATCACCGAGGAGGCTTTCGGTGGATGCCCTGTA
ATTATTAGAGACTATCCGAAGGACATTAAAGCATTTTACATGCGGCAGAATGATGATGGA
AAGACTGTTGCAGCCATGGATATGTTGGTACCTCGGGTCGGGGAACTTATTGGTGGAAGT
CAAAGGGAGGAACGCCTTGAATACCTAGAAGAGCGCTTGGATAACTTGAATCTCAACAAA
GAAAGCTTTTGGTGGTATCTTGATCTGCGCCGTTATGGTTCAGTTCCTCATGCTGGATTT
GGATTAGGCTTCGAAAGGCTCGTTCAATTTGCGACTGGAATAGACAACATAAGAGATGCA
ATACCTTTCCCTCGGACACCCGGCTCTGCTGAATTTTGA

Peptide Sequence

PEP ID

XP_016489711.1
PEP Infomation

PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial-like [Nicotiana tabacum]
Sequence

MAGALSPATTLRLKPFCTVRFFTNYRKPIKILTPNFHSSFPLKLHTSSTPAPYLCRQRSF
CSVVSAAISSGEAVEKSKFEQKKDIKTEQVREFKKRLSIADIKGGPDEGLDRLGETLVVR
GWVRTVRAQSSVTFIDVNDGSCLSNMQCVMGSEAEGYDQVDNGSISTGASVCIEGTVVGS
QGSKQKIELKVQKLVVVGKSDPSFPIQKKRVSREFLRTKAHLRPRTNTFGAVSRVRNALA
YATHKFFQENGFVWVSSPIITASDCEGAGEQFRVTTLIPTSKECGDSPVNAIPTTESGSV
DWSQDFFGKQAFLTVSGQLNGETYATALSDIYTFGPTFRAENSNTSRHLAEFWMIEPELA
FADLDDDMACATAYLQYVVQYVLENCKEDMDFFNTWIEKGIINRLSDVVEKNFVQLTYTD
AIELLLKATKKFDFPVKWGCDLQSEHERYITEEAFGGCPVIIRDYPKDIKAFYMRQNDDG
KTVAAMDMLVPRVGELIGGSQREERLEYLEERLDNLNLNKESFWWYLDLRRYGSVPHAGF
GLGFERLVQFATGIDNIRDAIPFPRTPGSAEF

Transcript Sequence

Gene sequence data has not been registered.